| AmpGram | Prediction of Antimicrobial Peptides Michal Burdukiewicz , Katarzyna Sidorczuk , Filip Pietluch , Dominik Rafacz , Stefan Roediger , Jaroslaw Chilimoniuk |
| AmyloGram | Prediction of Amyloid Proteins Michal Burdukiewicz , Piotr Sobczyk , Stefan Roediger |
| CancerGram | Prediction of Anticancer Peptides Michal Burdukiewicz , Katarzyna Sidorczuk , Filip Pietluch , Dominik Rafacz , Mateusz Bakala , Jadwiga Słowik |
| HaDeX | Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data Weronika Puchala , Michal Burdukiewicz , Dominik Rafacz |
| MBmca | Nucleic Acid Melting Curve Analysis Stefan Roediger , Michal Burdukiewicz |
| PCRedux | Quantitative Polymerase Chain Reaction (qPCR) Data Mining and Machine Learning Toolkit Stefan Roediger , Michal Burdukiewicz , Andrej-Nikolai Spiess , Konstantin A. Blagodatskikh , Dominik Rafacz |
| RDML | Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files Konstantin A. Blagodatskikh , Stefan Roediger , Michal Burdukiewicz , Andrej-Nikolai Spiess |
| SLOPE | Sorted L1 Penalized Estimation Johan Larsson , Jonas Wallin , Malgorzata Bogdan , Ewout van den Berg , Chiara Sabatti , Emmanuel Candes , Evan Patterson , Weijie Su , Jakub Kała , Krystyna Grzesiak , Michal Burdukiewicz , Jerome Friedman , Trevor Hastie , Rob Tibshirani , Balasubramanian Narasimhan , Noah Simon , Junyang Qian , Akarsh Goyal |
| auditor | Model Audit - Verification, Validation, and Error Analysis Alicja Gosiewska , Przemyslaw Biecek , Hubert Baniecki , Tomasz Mikołajczyk , Michal Burdukiewicz , Szymon Maksymiuk |
| bcv | Cross-Validation for the SVD (Bi-Cross-Validation) Michal Burdukiewicz , Patrick O. Perry , Seyed Morteza Najibi |
| biogram | N-Gram Analysis of Biological Sequences Michal Burdukiewicz , Piotr Sobczyk , Chris Lauber , Dominik Rafacz , Katarzyna Sidorczuk |
| chipPCR | Toolkit of Helper Functions to Pre-Process Amplification Data Stefan Roediger , Michal Burdukiewicz , Konstantin A. Blagodatskikh , Andrej-Nikolai Spiess |
| countfitteR | Comprehensive Automatized Evaluation of Distribution Models for Count Data Jaroslaw Chilimoniuk , Alicja Gosiewska , Jadwiga Słowik , Michal Burdukiewicz , Stefan Roediger |
| rSAFE | Surrogate-Assisted Feature Extraction Alicja Gosiewska , Anna Gierlak , Przemyslaw Biecek , Michal Burdukiewicz |
| shapper | Wrapper of Python Library 'shap' Szymon Maksymiuk , Alicja Gosiewska , Przemyslaw Biecek , Mateusz Staniak , Michal Burdukiewicz |
| signalHsmm | Predict Presence of Signal Peptides Michal Burdukiewicz , Piotr Sobczyk , Jaroslaw Chilimoniuk |
| tidysq | Tidy Processing and Analysis of Biological Sequences Dominik Rafacz , Michal Burdukiewicz , Laura Bakala , Leon Eyrich Jessen , Stefan Roediger , Jadwiga Slowik , Weronika Puchala , Katarzyna Sidorczuk , Filip Pietluch , Jaroslaw Chilimoniuk |